PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009676-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 416aa    MW: 46284 Da    PI: 9.2086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009676-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05828323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++Cgk F r  nL+ H r H
  NNU_009676-RA  8 CEICGKGFQRDQNLQLHRRGH 28
                   *******************88 PP

2zf-C2H213.70.0001982104123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  NNU_009676-RA  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-6528No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.62E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAEETARI TAASNIHNVT AGNINYHFLG TSSARPNMVQ HFSPVFKPIQ  180
SSNDGAIDQS RPGLSLWMNQ GSQSSQALMN NNLPELHQIG SAGLGTLFAT DPLISSCSNI  240
PSQMDYPVNW DFGNKLSSTN TGELTSTSLP LTNLKEVGSP RFSSAPSLYS TQHHHNQLPP  300
PIMSATALLQ KAAAIGSTWN EPSFLESFGV KCNNSQVVQD GNKYNGLFAP NSVPTNLTTD  360
LENSASDLSS MNNQLQMYPR KRQNTQKDDT EGGQTRDFLG VGVHQTICPS TINGWI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260340.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-129IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I00.0A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-130C2H2 family protein